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1.
Biomed Pharmacother ; 141: 111638, 2021 Sep.
Article in English | MEDLINE | ID: covidwho-1274168

ABSTRACT

Repositioning or "repurposing" of existing therapies for indications of alternative disease is an attractive approach that can generate lower costs and require a shorter approval time than developing a de novo drug. The development of experimental drugs is time-consuming, expensive, and limited to a fairly small number of targets. The incorporation of separate and complementary data should be used, as each type of data set exposes a specific feature of organism knowledge Drug repurposing opportunities are often focused on sporadic findings or on time-consuming pre-clinical drug tests which are often not guided by hypothesis. In comparison, repurposing in-silico drugs is a new, hypothesis-driven method that takes advantage of big-data use. Nonetheless, the widespread use of omics technology, enhanced data storage, data sense, machine learning algorithms, and computational modeling all give unparalleled knowledge of the methods of action of biological processes and drugs, providing wide availability, for both disease-related data and drug-related data. This review has taken an in-depth look at the current state, possibilities, and limitations of further progress in the field of drug repositioning.


Subject(s)
Computer Simulation , Drug Discovery/methods , Drug Repositioning/methods , Machine Learning , Pharmaceutical Preparations/administration & dosage , Animals , Big Data , Computer Simulation/statistics & numerical data , Drug Delivery Systems/methods , Drug Delivery Systems/statistics & numerical data , Drug Discovery/statistics & numerical data , Drug Repositioning/statistics & numerical data , Humans , Machine Learning/statistics & numerical data
2.
Nucleic Acids Res ; 49(D1): D1388-D1395, 2021 01 08.
Article in English | MEDLINE | ID: covidwho-910391

ABSTRACT

PubChem (https://pubchem.ncbi.nlm.nih.gov) is a popular chemical information resource that serves the scientific community as well as the general public, with millions of unique users per month. In the past two years, PubChem made substantial improvements. Data from more than 100 new data sources were added to PubChem, including chemical-literature links from Thieme Chemistry, chemical and physical property links from SpringerMaterials, and patent links from the World Intellectual Properties Organization (WIPO). PubChem's homepage and individual record pages were updated to help users find desired information faster. This update involved a data model change for the data objects used by these pages as well as by programmatic users. Several new services were introduced, including the PubChem Periodic Table and Element pages, Pathway pages, and Knowledge panels. Additionally, in response to the coronavirus disease 2019 (COVID-19) outbreak, PubChem created a special data collection that contains PubChem data related to COVID-19 and the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).


Subject(s)
COVID-19/prevention & control , Databases, Chemical , Information Storage and Retrieval/statistics & numerical data , SARS-CoV-2/isolation & purification , User-Computer Interface , COVID-19/epidemiology , COVID-19/virology , Drug Discovery/statistics & numerical data , Epidemics , Humans , Information Storage and Retrieval/methods , Internet , Public Health/statistics & numerical data , SARS-CoV-2/physiology , Software
3.
Nucleic Acids Res ; 49(D1): D1160-D1169, 2021 01 08.
Article in English | MEDLINE | ID: covidwho-910390

ABSTRACT

DrugCentral is a public resource (http://drugcentral.org) that serves the scientific community by providing up-to-date drug information, as described in previous papers. The current release includes 109 newly approved (October 2018 through March 2020) active pharmaceutical ingredients in the US, Europe, Japan and other countries; and two molecular entities (e.g. mefuparib) of interest for COVID19. New additions include a set of pharmacokinetic properties for ∼1000 drugs, and a sex-based separation of side effects, processed from FAERS (FDA Adverse Event Reporting System); as well as a drug repositioning prioritization scheme based on the market availability and intellectual property rights forFDA approved drugs. In the context of the COVID19 pandemic, we also incorporated REDIAL-2020, a machine learning platform that estimates anti-SARS-CoV-2 activities, as well as the 'drugs in news' feature offers a brief enumeration of the most interesting drugs at the present moment. The full database dump and data files are available for download from the DrugCentral web portal.


Subject(s)
Antiviral Agents/therapeutic use , COVID-19 Drug Treatment , Databases, Pharmaceutical/statistics & numerical data , Drug Approval/statistics & numerical data , Drug Discovery/statistics & numerical data , Drug Repositioning/statistics & numerical data , SARS-CoV-2/drug effects , Antiviral Agents/adverse effects , Antiviral Agents/pharmacokinetics , COVID-19/epidemiology , COVID-19/virology , Drug Approval/methods , Drug Discovery/methods , Drug Repositioning/methods , Epidemics , Europe , Humans , Information Storage and Retrieval/methods , Internet , Japan , SARS-CoV-2/physiology , United States
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